| Package | us.nlm.vsac |
| Resource Type | ValueSet |
| Id | 2.16.840.1.113762.1.4.1146.994 |
| FHIR Version | R4 |
| Source | http://fhir.org/packages/us.nlm.vsac/https://vsac.nlm.nih.gov/valueset/2.16.840.1.113762.1.4.1146.994/expansion |
| URL | http://cts.nlm.nih.gov/fhir/ValueSet/2.16.840.1.113762.1.4.1146.994 |
| Version | 20230125 |
| Status | active |
| Date | 2023-01-25T01:08:07-05:00 |
| Name | OrganismsTestsForNucleicAcid |
| Title | Organisms (Tests for Nucleic Acid) |
| Realm | us |
| Authority | hl7 |
| Purpose | (Clinical Focus: This set of values contains codes for laboratory test names associated with detecting the Nucleic Acid of non-specific organisms.),(Data Element Scope: Laboratory tests names that were ordered or observed.),(Inclusion Criteria: LOINC search: "(microorganism or pathogens) nucleic acid -panel" plus "41852-5 Microorganism or agent identified in Unspecified specimen"),(Exclusion Criteria: panel test) |
No resources found
| CodeSystem | |
| loinc.org | Logical Observation Identifiers, Names and Codes (LOINC) |
No narrative content found in resource
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