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FHIR IG Statistics: ValueSet/2.16.840.1.113762.1.4.1146.994

Packageus.nlm.vsac
Resource TypeValueSet
Id2.16.840.1.113762.1.4.1146.994
FHIR VersionR4
Sourcehttp://fhir.org/packages/us.nlm.vsac/https://vsac.nlm.nih.gov/valueset/2.16.840.1.113762.1.4.1146.994/expansion
URLhttp://cts.nlm.nih.gov/fhir/ValueSet/2.16.840.1.113762.1.4.1146.994
Version20230125
Statusactive
Date2023-01-25T01:08:07-05:00
NameOrganismsTestsForNucleicAcid
TitleOrganisms (Tests for Nucleic Acid)
Realmus
Authorityhl7
Purpose(Clinical Focus: This set of values contains codes for laboratory test names associated with detecting the Nucleic Acid of non-specific organisms.),(Data Element Scope: Laboratory tests names that were ordered or observed.),(Inclusion Criteria: LOINC search: "(microorganism or pathogens) nucleic acid -panel" plus "41852-5 Microorganism or agent identified in Unspecified specimen"),(Exclusion Criteria: panel test)

Resources that use this resource

No resources found


Resources that this resource uses

CodeSystem
loinc.orgLogical Observation Identifiers, Names and Codes (LOINC)

Narrative

No narrative content found in resource


Source

{
  "resourceType": "ValueSet",
  "id": "2.16.840.1.113762.1.4.1146.994",
  "meta": {
    "versionId": "32",
    "lastUpdated": "2023-12-21T17:43:03.000-05:00",
    "profile": [
      "http://hl7.org/fhir/StructureDefinition/shareablevalueset",
      "http://hl7.org/fhir/us/cqfmeasures/StructureDefinition/computable-valueset-cqfm",
      "http://hl7.org/fhir/us/cqfmeasures/StructureDefinition/publishable-valueset-cqfm"
    ]
  },
  "extension": [
    {
      "url": "http://hl7.org/fhir/StructureDefinition/valueset-author",
      "valueContactDetail": {
        "name": "CSTE Author"
      }
    },
    {
      "url": "http://hl7.org/fhir/StructureDefinition/valueset-keyWord",
      "valueString": "G_Common"
    },
    {
      "url": "http://hl7.org/fhir/StructureDefinition/resource-lastReviewDate",
      "valueDate": "2024-06-05"
    },
    {
      "url": "http://hl7.org/fhir/StructureDefinition/valueset-effectiveDate",
      "valueDate": "2023-01-25"
    }
  ],
  "url": "http://cts.nlm.nih.gov/fhir/ValueSet/2.16.840.1.113762.1.4.1146.994",
  "identifier": [
    {
      "system": "urn:ietf:rfc:3986",
      "value": "urn:oid:2.16.840.1.113762.1.4.1146.994"
    }
  ],
  "version": "20230125",
  "name": "OrganismsTestsForNucleicAcid",
  "title": "Organisms (Tests for Nucleic Acid)",
  "status": "active",
  "date": "2023-01-25T01:08:07-05:00",
  "publisher": "CSTE Steward",
  "jurisdiction": [
    {
      "coding": [
        {
          "system": "urn:iso:std:iso:3166",
          "code": "US"
        }
      ]
    }
  ],
  "purpose": "(Clinical Focus: This set of values contains codes for laboratory test names associated with detecting the Nucleic Acid of non-specific organisms.),(Data Element Scope: Laboratory tests names that were ordered or observed.),(Inclusion Criteria: LOINC search: \"(microorganism or pathogens) nucleic acid -panel\" plus \"41852-5 Microorganism or agent identified in Unspecified specimen\"),(Exclusion Criteria: panel test)",
  "compose": {
    "include": [
      {
        "system": "http://loinc.org",
        "concept": [
          {
            "code": "35691-5",
            "display": "XXX microorganism DNA [Presence] in Specimen by NAA with probe detection"
          },
          {
            "code": "38347-1",
            "display": "XXX microorganism DNA [Identifier] in Specimen by NAA with probe detection"
          },
          {
            "code": "40971-4",
            "display": "XXX microorganism DNA [Presence] in Urine by NAA with probe detection"
          },
          {
            "code": "40972-2",
            "display": "XXX microorganism DNA [Presence] in Serum or Plasma by NAA with probe detection"
          },
          {
            "code": "62201-9",
            "display": "XXX microorganism DNA [Identifier] in Serum or Plasma by NAA with probe detection"
          },
          {
            "code": "66885-5",
            "display": "Bacteria identified based on 16S rRNA gene [Identifier] in Specimen by Sequencing"
          },
          {
            "code": "79390-1",
            "display": "Gastrointestinal pathogens identified in Stool by NAA with probe detection"
          },
          {
            "code": "80602-6",
            "display": "Respiratory pathogens identified [Type] in Nasopharynx by NAA with probe detection"
          },
          {
            "code": "81655-3",
            "display": "Respiratory pathogens DNA and RNA identified in Respiratory specimen by NAA with probe detection"
          },
          {
            "code": "82125-6",
            "display": "Respiratory pathogens DNA and RNA tested for in Pleural fluid by NAA with probe detection"
          },
          {
            "code": "82127-2",
            "display": "Respiratory pathogens DNA and RNA identified in Pleural fluid by NAA with probe detection"
          },
          {
            "code": "82134-8",
            "display": "Respiratory pathogens DNA and RNA tested for in Respiratory specimen by NAA with probe detection"
          },
          {
            "code": "88516-0",
            "display": "Gastrointestinal pathogens identified in Specimen by NAA with probe detection"
          },
          {
            "code": "92249-2",
            "display": "Microorganism gene tested for [Identifier] by Molecular method"
          },
          {
            "code": "92251-8",
            "display": "Microorganism gene detected [Presence] by Molecular method"
          },
          {
            "code": "92253-4",
            "display": "Microorganism identified in Isolate or Specimen by Molecular genetics method"
          }
        ]
      }
    ]
  },
  "expansion": {
    "identifier": "urn:uuid:254bc495-45c5-46c4-a213-c7975d85f620",
    "timestamp": "2025-05-23T18:57:00-04:00",
    "total": 16,
    "contains": [
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "35691-5",
        "display": "XXX microorganism DNA [Presence] in Specimen by NAA with probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "38347-1",
        "display": "XXX microorganism DNA [Identifier] in Specimen by NAA with probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "40971-4",
        "display": "XXX microorganism DNA [Presence] in Urine by NAA with probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "40972-2",
        "display": "XXX microorganism DNA [Presence] in Serum or Plasma by NAA with probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "62201-9",
        "display": "XXX microorganism DNA [Identifier] in Serum or Plasma by NAA with probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "66885-5",
        "display": "Bacteria identified based on 16S rRNA gene [Identifier] in Specimen by Sequencing"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "79390-1",
        "display": "Gastrointestinal pathogens identified in Stool by NAA with probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "80602-6",
        "display": "Respiratory pathogens identified [Type] in Nasopharynx by NAA with probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "81655-3",
        "display": "Respiratory pathogens DNA and RNA [Identifier] in Respiratory system specimen by NAA with probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "82125-6",
        "display": "Respiratory pathogens DNA and RNA tested for in Pleural fluid by NAA with probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "82127-2",
        "display": "Respiratory pathogens DNA and RNA [Identifier] in Pleural fluid by NAA with probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "82134-8",
        "display": "Respiratory pathogens DNA and RNA tested for in Respiratory system specimen by NAA with probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "88516-0",
        "display": "Gastrointestinal pathogens identified in Specimen by NAA with probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "92249-2",
        "display": "Microorganism gene tested for [Identifier] by Molecular method"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "92251-8",
        "display": "Microorganism gene detected [Presence] by Molecular method"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "92253-4",
        "display": "Microorganism identified in Isolate or Specimen by Molecular genetics method"
      }
    ]
  }
}